Updated reference data set by adding 6 Dengue virus complete
The six genome sequences, which were added to reference data set,
- one sequence of genotype 1-II [GenBank: DQ672556.1],
- three sequences of genotype 3-I [GenBank: DQ401695.1, DQ401694.1
and AY496879.2] and
- two sequences of newly added genotype 3-V [GenBank: AF317645.1 and
M93130.1], which formed a separate monophyletic sister clade
with existing DENV genotypes 3-I, 3-II and 3-III (King et al., 2008;
Usme-Ciro et al., 2008; Aquino et al, 2009; Imrie et al., 2010;
Warrilow et al., 2012).
The genotype-specific distance cut-offs for RTD-based DENV
subtype prediction were updated in accordance with the updated
reference data set.
Kolekar P., Kale
M., Kulkarni-Kale U., Alignment-free distance measure based on
return time distribution for sequence analysis: Applications
to clustering, molecular phylogeny and subtyping,
Molecular Phylogenetics and Evolution, 2012, 65(2): 510-522.