The details of reference, true positive and negative data sets are available from here
New in this version:
Updated reference data set by adding 6 Dengue virus complete genome sequences.
The six genome sequences, which were added to reference data set, include,
- one sequence of genotype 1-II [GenBank: DQ672556.1],
- three sequences of genotype 3-I [GenBank: DQ401695.1, DQ401694.1 and AY496879.2] and
- two sequences of newly added genotype 3-V [GenBank: AF317645.1 and M93130.1], which formed a separate
monophyletic sister clade with existing DENV genotypes 3-I, 3-II and 3-III (King et al., 2008; Usme-Ciro et al., 2008;
Aquino et al, 2009; Imrie et al., 2010; Warrilow et al., 2012).
The genotype-specific distance cut-offs for RTD-based DENV subtype prediction were updated in accordance with the
updated reference data set.